SNP Profiles of PA 121 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
1._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
2._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
3._RUQ_1059	_	_	CT	CC	_	_	CC	_	CC	_	_	TT	CC	_
4._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
5._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
6._RUQ_1059	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
7._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
8._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
9._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
10._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
11._RUQ_1059	_	_	_	CC	_	_	CC	_	_	_	_	_	_	_
12._RUQ_1059	_	_	_	CC	_	_	_	_	CC	_	_	_	CC	_
13._GC-05-011-1-11	AT	AA	TT	CC	AG	GG	CC	CC	CC	CC	AG	TT	CC	CC
14._PA_121_[PER]	AT	AA	TT	CC	_	_	_	_	CC	CC	AG	_	CC	_
15._PA_121_[PER]	TT	_	CT	CC	_	_	_	_	CC	TT	AG	_	TT	_
16._GC-05-011-1-11	TT	_	CT	CC	AA	AA	TT	TT	CC	TT	AG	TT	TT	TT
17._RUQ_1059	AA	AC	_	CC	GG	AG	_	GG	GG	_	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
1._GC-05-011-1-11	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
2._GC-05-011-1-11	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
3._RUQ_1059	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC	GG
4._PA_121_[PER]	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
5._PA_121_[PER]	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
6._RUQ_1059	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
7._PA_121_[PER]	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
8._PA_121_[PER]	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
9._PA_121_[PER]	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
10._PA_121_[PER]	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_	GG
11._RUQ_1059	_	_	GG	TT	_	_	_	_	_	_	_	_	_	GG
12._RUQ_1059	_	_	_	_	GG	_	CT	_	_	GG	_	AA	CC	CC
13._GC-05-011-1-11	AA	CC	AG	CG	CG	GG	CT	AA	CC	GG	TT	AA	CC	GG
14._PA_121_[PER]	_	_	AG	_	_	GG	_	_	_	_	TT	AA	_	GG
15._PA_121_[PER]	_	_	AG	_	_	GG	_	_	_	_	AA	TT	_	GG
16._GC-05-011-1-11	TT	AA	AG	CG	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
17._RUQ_1059	TT	CC	GG	CG	_	CG	AG	AA	AA	GG	AT	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
1._GC-05-011-1-11	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
2._GC-05-011-1-11	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
3._RUQ_1059	_	_	_	GG	CG	CC	AG	GT	_	_	GG	TT	_	_
4._PA_121_[PER]	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
5._PA_121_[PER]	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
6._RUQ_1059	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
7._PA_121_[PER]	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
8._PA_121_[PER]	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
9._PA_121_[PER]	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
10._PA_121_[PER]	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_	_
11._RUQ_1059	_	_	_	_	CG	_	AG	_	_	_	_	TT	_	_
12._RUQ_1059	_	_	_	GG	CG	_	_	_	_	TT	_	TT	_	_
13._GC-05-011-1-11	AA	TT	GG	AA	CC	CC	AG	TT	GG	TT	AG	TT	AA	CG
14._PA_121_[PER]	AA	_	_	_	CC	_	AG	TT	_	_	AG	_	_	_
15._PA_121_[PER]	AA	_	_	_	GG	_	AG	GT	_	_	GG	_	_	_
16._GC-05-011-1-11	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	CT	GG	GG
17._RUQ_1059	AA	AA	AC	GG	CG	CC	AG	AC	CC	AA	GG	AA	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CC	CT	TT
1._GC-05-011-1-11	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CC	CT	TT
2._GC-05-011-1-11	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	_	CT	TT
3._RUQ_1059	GG	TT	_	_	GG	_	_	_	_	_	_	CC	_	TT
4._PA_121_[PER]	_	_	TT	_	_	_	_	_	_	_	_	CC	CT	_
5._PA_121_[PER]	_	_	TT	_	_	_	_	_	_	_	_	CC	CT	_
6._RUQ_1059	_	_	TT	_	_	_	_	_	_	_	_	CC	CT	_
7._PA_121_[PER]	_	_	TT	_	_	_	_	_	_	_	_	CC	CT	_
8._PA_121_[PER]	_	_	TT	_	_	_	_	_	_	_	_	CC	CT	_
9._PA_121_[PER]	_	_	TT	_	_	_	_	_	_	_	_	_	CT	_
10._PA_121_[PER]	_	_	TT	_	_	_	_	_	_	_	_	CC	CT	_
11._RUQ_1059	_	_	_	_	GG	_	_	_	_	_	_	_	_	_
12._RUQ_1059	_	TT	_	AA	_	_	_	_	_	_	_	CC	_	_
13._GC-05-011-1-11	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	_	TT	CT	TT
14._PA_121_[PER]	_	_	CT	_	_	_	_	_	_	_	_	TT	CT	_
15._PA_121_[PER]	_	_	CC	_	_	_	_	_	_	_	_	CT	CC	_
16._GC-05-011-1-11	TT	AT	CC	AA	GG	GG	CT	AC	GG	AG	TT	CT	CC	TT
17._RUQ_1059	CC	_	AA	_	GG	AA	GG	_	GG	AA	CC	GG	AG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC
1._GC-05-011-1-11	GG	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC
2._GC-05-011-1-11	GG	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC
3._RUQ_1059	-	CC	CT	CT	AA	_	GG	AC	AA	GG	GG	AG	_	_
4._PA_121_[PER]	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
5._PA_121_[PER]	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
6._RUQ_1059	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
7._PA_121_[PER]	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
8._PA_121_[PER]	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
9._PA_121_[PER]	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
10._PA_121_[PER]	_	_	_	CT	AA	GG	_	AC	AA	GG	GG	_	_	_
11._RUQ_1059	GG	_	_	_	_	_	_	AC	AA	_	GG	AG	_	_
12._RUQ_1059	_	GG	CT	_	AA	_	GG	AC	AA	_	_	_	_	CC
13._GC-05-011-1-11	AA	CC	TT	CT	AA	CG	GG	CC	AA	GT	GG	AG	CT	CC
14._PA_121_[PER]	_	CC	_	CT	AA	CG	_	CC	AA	GT	GG	_	_	_
15._PA_121_[PER]	_	CC	_	CT	AA	GG	_	CC	AA	GT	GT	_	_	_
16._GC-05-011-1-11	AG	CC	TT	CT	AA	GG	GG	CC	AA	GT	GT	AG	TT	CC
17._RUQ_1059	GG	GG	AG	AG	AA	GG	GG	AC	AA	CC	CC	AG	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT
1._GC-05-011-1-11	AA	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT
2._GC-05-011-1-11	AA	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT
3._RUQ_1059	_	_	_	_	_	_	_	AA	GG	_	_	AA	TT	_
4._PA_121_[PER]	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
5._PA_121_[PER]	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
6._RUQ_1059	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
7._PA_121_[PER]	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
8._PA_121_[PER]	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
9._PA_121_[PER]	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
10._PA_121_[PER]	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT	TT
11._RUQ_1059	AA	_	_	_	_	_	_	AA	GG	_	_	AA	_	_
12._RUQ_1059	_	_	_	_	_	_	_	_	CC	_	_	_	_	TT
13._GC-05-011-1-11	AA	CT	AC	AG	AC	AA	AA	CC	CG	CC	AA	AA	TT	TT
14._PA_121_[PER]	AA	CT	_	_	_	_	_	CC	CG	_	_	_	TT	TT
15._PA_121_[PER]	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	CT
16._GC-05-011-1-11	AA	CT	CC	AG	CC	CC	AA	CC	CG	CC	AA	CC	CC	CT
17._RUQ_1059	_	AA	CC	AA	CC	AC	_	AA	CC	GG	AT	AA	AA	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
1._GC-05-011-1-11	CC	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
2._GC-05-011-1-11	CC	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
3._RUQ_1059	_	_	AG	CC	CC	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
4._PA_121_[PER]	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
5._PA_121_[PER]	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
6._RUQ_1059	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
7._PA_121_[PER]	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
8._PA_121_[PER]	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._PA_121_[PER]	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._PA_121_[PER]	_	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
11._RUQ_1059	CC	_	_	CC	_	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
12._RUQ_1059	_	_	_	_	_	_	_	_	_	X_X	X_X	X_X	X_X	X_X
13._GC-05-011-1-11	CT	TT	AG	TT	CC	TT	CT	AA	GG	X_X	X_X	X_X	X_X	X_X
14._PA_121_[PER]	CT	_	AG	_	CC	TT	CT	_	_	X_X	X_X	X_X	X_X	X_X
15._PA_121_[PER]	CC	_	AA	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
16._GC-05-011-1-11	CC	TT	AA	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
17._RUQ_1059	_	AG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER] GC-05-011-1-11

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

1._PA_121_[PER] GC-05-011-1-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

2._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

3._PA_121_[PER] RUQ_1059

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_121_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

5._PA_121_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

6._PA_121_[PER] RUQ_1059

identical
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
40 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

9._PA_121_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

10._PA_121_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

11._PA_121_[PER] RUQ_1059

95.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._PA_121_[PER] RUQ_1059

84 %
25 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

13._PA_121_[PER] GC-05-011-1-11

72.8 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._PA_121_[PER]

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._PA_121_[PER] GC-05-011-1-11

59.8 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

17._PA_121_[PER] RUQ_1059

50.6 %
79 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240